fastqc
Link to section 'Description' of 'fastqc' Description
A quality control tool for high throughput sequence data.
Link to section 'Versions' of 'fastqc' Versions
- Anvil: 0.11.9, 0.12.1
- Bell: 0.11.9, 0.12.1
- Negishi: 0.11.9, 0.12.1
- Scholar: 0.11.9, 0.12.1
- Gautschi: 0.11.9, 0.12.1
Link to section 'Module' of 'fastqc' Module
You can load the modules by:
module load fastqc
Link to section 'Example job' of 'fastqc' Example job
To run Fastqc on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 4
#SBATCH --job-name=fastqc
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module load fastqc
fastqc -o fastqc_out -t 4 FASTQ1 FASTQ2