bwa
Link to section 'Description' of 'bwa' Description
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences.
Link to section 'Versions' of 'bwa' Versions
- Anvil: 0.7.17
- Bell: 0.7.17
- Negishi: 0.7.17
- Scholar: 0.7.17
- Gautschi: 0.7.17
Link to section 'Module' of 'bwa' Module
You can load the modules by:
module load bwa
Link to section 'Example job' of 'bwa' Example job
To run BWA on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=bwa
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module load bwa
bwa index ref.fasta
bwa mem ref.fasta input.fq > test.sam